The ability to consistently distinguish real protein structures from computationally generated model decoys is not yet a solved problem. One route to distinguish real protein structures from decoys is to delineate the important physical features that...
Official repository for the ProteinGym benchmarks (⭐ 392)
We study the combined influence of amino acid composition and chain length on the thermal stability of protein structures. A new parameterization of the internal free energy is considered, as the sum of hydrophobic effect, hydrogen-bond and de-hydrat...
Tags: protein-database | Score: 1
Listing of papers about machine learning for proteins. (⭐ 1689)
Protein A is a 42 kDa surface protein originally found in the cell wall of the bacteria Staphylococcus aureus. It is encoded by the spa gene and its regulation
Jan 23, 2025 · C-reactive protein, also called CRP, is a protein made by the liver. The level of CRP increases when there's inflammation in the body. A simple blood test can check your C …
This is the topic that's confusing me a lot. Some says 2.2g/kg , some says 1,8g/kg , some says 1.5g/kg protein is required for putting on muscle. Ive even heard people saying that 1.0g/kg protein is a...
Tags: python, opengl, bioinformatics, vtk, protein-database | Score: 5
Feb 14, 2022 · Protein in urine — also called proteinuria (pro-tee-NU-ree-uh) — is an excess of bloodborne proteins in urine. Protein is one of the substances measured in a lab test to …
Code for the ProteinMPNN paper (⭐ 1642)
All human diseases involve proteins, yet our current tools to characterize and quantify them are limited. To better elucidate proteins across space, time, and molecular composition, we provide provocative projections for technologies to meet the chal...
Jan 28, 2026 · We sift through all the protein trends to find the cleanest ingredients, the best-quality manufacturing processes, and the most ethical protein brands (with cost and flavor in mind) for …
Dec 3, 2024 · We researched and tested more than 25 protein powders to find the best on the market. Learn more about the types of protein powders, ingredients to be aware of, and which ones are the …
The simulation of a protein's folding process is often done via stochastic local search, which requires a procedure to apply structural changes onto a given conformation. Here, we introduce a constraint-based approach to enumerate lattice protein s...
Protein-peptide interactions play essential functional roles in living organisms and their structural characterization is a hot subject of current experimental and theoretical research. Computational modeling of the structure of protein-peptide inter...
Large Protein Language Models have shown strong potential for generative protein design, yet they frequently produce structural hallucinations, generating sequences with high linguistic likelihood that fold into thermodynamically unstable conformatio...
Using a structure-based coarse-grained model of proteins, we study the mechanism of unfolding of knotted proteins through heating. We find that the dominant mechanisms of unfolding depend on the temperature applied and are generally distinct from tho...
We study the behavior of five proteins at the air-water and oil-water interfaces by all-atom molecular dynamics. The proteins are found to get distorted when pinned to the interface. This behavior is consistent with the phenomenological way of introd...
The steroidogenic acute regulatory protein, commonly referred to as StAR (STARD1), is a transport protein that regulates cholesterol transfer within the