We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to construct seeds with optimal sensitivity/selectivity trade-offs. We propose sever...
Neural networks are capable of learning rich, nonlinear feature representations shown to be beneficial in many predictive tasks. In this work, we use such models to explore different geographical feature representations in the context of predicting c...
While in the hierarchical model of structure formation, groups of galaxies are believed to be the scaled-down version of clusters of galaxies, a similarity breaking in the fundamental laws may occur on the group scale, reflecting a transition betwe...
The Citation Discovery Shared Task focuses on predicting the correct citation from a given candidate pool for a given paragraph. The main challenges stem from the length of the abstract paragraphs and the high similarity among candidate abstracts, ma...
We address the problem of estimating the sensitivity of seed-based similarity search algorithms. In contrast to approaches based on Markov models [18, 6, 3, 4, 10], we study the estimation based on homogeneous alignments. We describe an algorithm f...
Bill writing is a critical element of representative democracy. However, it is often overlooked that most legislative bills are derived, or even directly copied, from other bills. Despite the significance of bill-to-bill linkages for understanding th...
This paper proposes a new methodology to automatically build semantic hierarchies suitable for image annotation and classification. The building of the hierarchy is based on a new measure of semantic similarity. The proposed measure incorporates seve...
For linear nonautonomous differential equations we introduce a new family of spectrums defined with general nonuniform dichotomies: for a given growth rate $μ$ in a large family of growth rates, we consider a notion of spectrum, named nonuniform $μ...
Words and phrases acquire meaning from the way they are used in society, from their relative semantics to other words and phrases. For computers the equivalent of `society' is `database,' and the equivalent of `use' is `way to search the database.'...
This repository provides a semantic search system over the lewtun/github-issues dataset using sentence-transformers/multi-qa-mpnet-base-dot-v1. It allows developers to find the most relevant issue titles, descriptions, and solutions based on query meaning rather than keywords. FA…